Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis
Nunn, Adam; Chrstian Otto; Peter F. Stadler and David Langenberger
2021
Briefings in Bioinformatics
22
5
Atypical neural topographies underpin dysfunctional pattern separation in temporal lobe epilepsy
Li, Qiongling; Shahin Tavakol; Jessica Royer; Sare Lariviere; Reinder Vox De Wael; Bo-yong Park; Casey Paquola; Debin Zeng; Benoitu Caldairou; Danielle Bassett; Andrea Bernasconi; Neda Bernasconi; Birgit Grauscher; Jonathan Smallwood; Lorenzo Caciagli; Shuyu Li and Boris C. Bernhardt
2021
Brain
144
2486-2498
Emerging adaptive strategies under temperature fluctuations in a laboratory evolution experiment of Escherichia coli
Lambros, Maryl; Ximo Pechuan-Jorge; Daniel Biro; Kenny Ye and Aviv Bergman
2021
Frontiers in Microbiology
12
Work, entropy production, and thermodynamics of information under protocol constraints
Kolchinsky, Artemy and David H. Wolpert
2021
Physical Review X
11
4
Remotely sensed assessment of increasing chronic and episodic drought effects on a Costa Rican tropical dry forest
Huang, Cho-Ying; Sandra M. Duran; Kai-Ting Hu; Hsin-Ju Li; Nathan G. Swenson and Brian J. Enquist
2021
Ecosphere
12
11
Synchronization within synchronization: Transients and intermittency in ecological networks
Fan, Huawei; Ling-Wei Kong; Xingang Wang; Alan Hastings and Ying-Cheng Lai
2021
National Science Review
8
10
Biodiversity loss due to more than climate change
Dobson, Andrew; Zeke Rowe; Joel Berger; Philippa Wholey and Tim Caro
2021
Science
374
6568
698-699
Introduction to the special issue: quantifying collectivity
Daniels, Bryan C.; Manfred D. Laubichler and Jessica C. Flack
2021
Theory in Biosciences
140
321-232
Natural selection beyond life? A workshop report
Charlat, Sylvain; Andre Ariew; Pierrick Bourrat; Maria Ferreira Ruiz; Thomas Heams; Philippe Huneman; Sandeep Krishna; Michael Lachmann; Nicolas Lartilot; Louis Le Sergeant d’heidecourt; Christophe Maladerre; Philippe Nghe; Etienne Rajon; Olivier Rivoire; Matteo Smerlak and Zorana Zeravcic
2021
Life - Basel
11
10
Conservation needs to integrate knowledge across scales
Chaplin-Kramer, Rebecca; Kate A. Brauman; Jeannine Cavender-Bares; Sandra Diaz; Gabriela Teixeira Duarte; Brian J. Enquist; Lucas A. Garibaldi; Jonas Geldmann; Benjamin S. Halpern; Thomas W. Hertel; Colin K. Khoury; Joana Madeira Krieger; Sandra Lavorel; Thomas Mueller; Rachel A. Neugarten; Jesus Pinto-Ledezma; Stephen Polasky; Andy Purvis; Victoria Reyes-Garcia; Patrick R. Roehrdanz; Lynne J. Shannon; M. Rebecca Shaw; Bernardo B. N. Strassburg; Jason M. Tylianakis; Peter H. Vergurg; Piero Visconti and Noelia Zafra-Calvo
2021
Nature Ecology & Evolution
6
118-118
Monotonicity in the averaging process
Ben-Naim, E. and P. L. Krapovsky
2021
Journal of Physics A - Mathematical and Theoretical
54
49
Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer’s disease
Jorge, Natasha Andressa Nogueira; Uwe Ueberham; Mara Knobloch; Peter F. Stadler; Jorg Fallman and Thomas Arendt
2021
Scientific Reports
11
Systematic shifts in scaling behavior based on organizational strategy in universities
Taylor, Ryan C.; Xiaofan Liang; Manfred D. Laubichler; Geoffrey B. West; Christopher P. Kempes and Marion Dumas
2021
PLOS ONE
TwinCons: Conservation score for uncovering deep sequence similarity and divergence
Penev, Petar I.; Claudia Alvarez-Carreno; Eric Smith; Anton S. Petrov and Loren Dean Williams
2021
PLOS Computational Biology
Dependence of integrated, instantaneous, and fluctuating entropy production on the initial state in quantum and classical processes
Kolchinsky, Artemy and David H. Wolpert
2021
Physical Review E
104
5
Antibiotics shift the temperature response curve of Escherichia coli growth
Cruz-Loya, Mauricio; Elif Tekin; Tina Manzhu Kang; Natalya Cardona; Natalie Lozano-Huntelman; Alejandra Rodriguez-Verdugo; Van M. Savage and Pamela J. Yeh
2021
Msystems
6
4
Altered functional brain dynamics in chromosome 22q11.2 deletion syndrome during facial affect processing
Cornblath, Eli J.; Arun Mahadevan; Xiaosong He; Kosha Ruparel; David M. Lydon-Staley; Tyler M. Moore; Ruben C. Gur; Elaine H. Zackai; Beverly Emanuel; Donna M. McDonald-McGinn; Daniel H. Wolf; Theodore D. Satterhwaite; David R. Roald; Raquel E. Gur and Dani S. Bassett,Source: Molecular Psychiatry; DOI: 10.1038/s41380-021-01302-y; October 2021
2021
Molecular Psychiatry
A meta-analysis study of the robustness and universality of gut microbiome-metabolome associations
Miller, Efrat; Yadid M. Algavi and Elhanan Borenstein
2021
Microbiome
9
The interplay between the host microbiome and pathogenic viral infections
Gonzalez, Ruben; Santiago F. Elena
2021
mBio
12
6
Lexicostatistical studies in Khoisan II/1: How to make a Swadesh wordlist for Proto-Tuu
Starostin, George
2021
Journal of Language Relationship
19
2
99-135