Santa Fe
Institute

Multi-scale phase separation by explosive percolation with single-chromatin loop resolution

Sengupta, Kaustav; Michał Denkiewicz; Mateusz Chilinski; Teresa Szczepinska; Ayatullah Faruk Mollah; Sevastianos Korsak; Raissa D’Souza; Yin Ruin and Dariusz Plewczynski
2022
Computational and Structural Biotechnology Journal
20
3591-3603
Abstract

Evolving collaboration, dependencies, and use in the Rust Open Source Software ecosystem

Schueller, William; Johannes Wachs; Vito D. P. Servedio; Stefan Thurner and Vittorio Loreto
2022
Scientific Data
9
1
Abstract

AsymmeTree: A flexible Phyton package for the simulation of complex gene family histories

Schaller, David; Marc Hellmuth and Peter F. Stadler
2022
Software
1
276-298
Abstract

Statistical analysis reveals the onset of synchrony in sparse swarms of Photinus knulli fireflies

Sarfati, Raphael; Laura Gaudette; Joseph M. Cicero and Orit Peleg
2022
Journal of the Royal Society Interface
19
186
Abstract

Chimera states among synchronous fireflies

Sarfati, Raphael and Orit Peleg
2022
Science Advances
8
46
Abstract

Spatial phase synchronization of pistachio alternate bearing: Common-noise-induced synchronization of coupled chaotic oscillators

Sakai, Kenshi; Patrick H. Brown; Todd S. Rosenstock; Shrinivasa K. Upadhyaya and Alan Hastings
2022
Chaos Solitons & Fractals
165
2
Abstract

Traditional protocols and optimization methods lead to absent expression in a mycoplasma cell-free gene expression platform

Sakai, Andrei; Christopher R. Deich; Frank H. T. Nelissen; Aafke J. Jonker; Daniela M. de C. Bittencourt; Christopher P. Kempes; Kim S. Wise; Hans A. Heus; Wilhelm T. S. Huck; Katarzyna P. Adamala and John I. Glass
2022
Synthetic Biology
7
1
Abstract

Traditional protocols and optimization methods lead to absent expression in a mycoplasma cell-tree gene expression platform

Sakai, Andrei; Christopher R. Deich; Frank H. T. Nelissen; Aafke J. Jonker; Daniela M. De C. Bittencourt; Christopher P. Kempes; Kim S. Wise; Hans A. Heus; Wilhelm T. S. Huch and Katarzyna P. Adamala
2022
Synthetic Biology
7
1
Abstract

Intermittent regimes as a synchronization phenomenon in two sets of nonlinear chemical oscillators

Saavedra, Martin; Juan Perez-Mercader and Alberto P. Munuzuri
2022
Chaos
32
11
Abstract

Nonequilibrium statistical mechanics and optimal prediction of partially-observed complex systems

Rupe, Adam; Velimir V. Vesselinov and James P. Crutchfield
2022
New Journal of Physics
24
10
Abstract

Optimizing earthquake nowcasting with machine learning: The role of strain hardening in the earthquake cycle

Rundle, John B.; Joe Yazbeck; Andrea Donnellan; Geoffrey Fox; Lisa Grant Ludwig; Michael Heflin and James Crutchfield
2022
Earth and Space Science
9
11
Abstract

Long-range current-induced spin accumulation in chiral crystals

Roy, Arunesh; Frank T. Cerasoli; Anooja Jayaraj; Karma Tenzin; Marco Nardelli and Jagoda Slawinska
2022
NPJ Computational Materials
8
1
Abstract

Coring, profiling, and trenching: Archaeological field strategies for investigating the Pleistocene-Holocene-Anthropocene continuum

Rick, Torben C.; Abdullah M. Alsharekh; Todd J. Braje; Alison Crowther; Jon M. Erlandson; Dorian Q. Fuller; Kristina M. Gill; Huw S. Groucutt; Maria Guagnin; Richard Helm; Courtney A. Hofman; Mark Horton; Andrea Kay; Ravi Korisettar; Chantal Radimilahy; Leslie Reeder-Myers; Ceri Shipton; Henry T. Wright; Michael Petraglia and Nicole Boivin
2022
Quaternary International
628
1-17
Abstract

Loss of sustainability in scientific work

Reisz, Niklas; Vito D. P. Servedio; Vittorio Loreto; William Schueller; Marcia R. Ferreira and Stefan Thurner
2022
New Journal of Physics
24
5
Abstract

Monitoring supply networks from mobile phone data for estimating the systemic risk of an economy

Reisch, Tobias; Georg Heiler; Christian Diem; Peter Klimek and Stefan Thurner
2022
Scientific Reports
12
Abstract

Complete visitation statistics of one-dimensional random walks

Regnier, Leo; Maxim Dolgushev; Sidney Redner and Olivier Benichou
2022
Physical Review E
105
6
Abstract

A fresh look at the “hot hand” paradox

Redner, S.
2022
Physica D-Nonlinear Phenomena
442
Abstract

Citation bias, diversity, and ethics

Ray, Keisha S.; Perry Turn; Jordan D. Dworkin; Dani S, Bassett and David B. Resnik
2022
Accountability in Research
Abstract

Optimizing the human learnability of abstract network representations

Qian, William; Christopher W. Lynn; Andrei A. Klishin; Jennifer Stilo; Nicolas H. Christianson and Dani S. Bassett
2022
Proceedings of the National Academy of Sciences of the United States of America
119
Abstract

Resilience integrates concepts in aging research

Promislow, Daniel; Rosalyn M. Anderson; Marten Scheffer; Bernard Crespi; James DeGregori; Kelley Harris; Barbara Natterson Horowitz; Morgan E. Levine; Maria A. Riolo; David S. Schneider; Sabrina L. Spencer; Dario Riccardo Valenzano and Michael E. Hochberg
2022
Science of the Total Environment
25
5
Abstract