Santa Fe
Institute

Viral fitness determines the magnitude of transcriptomic and epigenetic reprograming of defense responses in plants

Correa, Regis L.; Alejandro Sanz-Carbonell; Zala Kogej; Sebastian Y. Muller; Silvia Ambros; Sara Lopez-Gomollon; Gustavo Gomez; David C. Baulcombe and Santiago F. Elena
2020
Molecular Biology and Evolution
37
7
1866-1881
Abstract

Diversity of structural controllability of complex networks with given degree sequence

Ghasemi, Abdorasoul; Marton Pasfai and Raissa D’Souza
2020
IEEE Transactions on Network Science and Engineering
Abstract

Adaptation of turnip mosaic potyvirus to a specific niche reduces its genetic and environmental robustness

Butkovic, Anamarija; Ruben Gonzalez; Ines Cobo and Santiago F. Elena
2020
Virus Evolution
veaa041
Abstract

The capacity of the ovarian cancer tumor microenvironment to integrate inflammation signaling conveys a shorter disease-free interval

Jordan, Kimberly R.; Matthew J. Sikora; Jill E. Slansky; Angela Minic; Jennifer K. Richer; Marisa R. Moroney; James B. Costello; Aaron Clauset; Kian Behbakht; T. Rajendra Kumar and Benjamin G. Bitler
2020
bioRxiv
Abstract

Leveraging multi-shell diffusion for studies of brain development in youth and young adulthood

Pines, Adam R.; Matthew Cieslak; Bart Larsen; Graham L. Baum; Philip A. Cook; Azeez Adebimpe; Diego G. Davila; Mark A. Elliott; Robert Jirsaraie; Kristin Murtha; Desmond J. Oathes; Kayla Piiwaa; Adon F. G. Rosen; Sage Rush; Russell T. Shinohara; Danielle S. Bassett; David R. Roalf and Theodore D. Satterthwaite
2020
Developmental Cognitive Neuroscience
43
Abstract

The effect of social balance on social fragmentation

Pham, Tuan Minh; Imre Kondor; Rudolf Handel and Stefan Thurner
2020
arXiv
Abstract

Production networks and epidemic spreading: How to restart the UK economy?

Pichler, Anton; Marco Pangallo; R. Maria del Rio-Chanona; Francois Lafond and J. Doyne Farmer
2020
arXiv
Abstract

Subfossil lemur discoveries from the Bank Protected Area in western Madagascar

Burney, David A.; Haingoson Andriamialison; Radosoa A. Andrianaivoarivelo; Steven Bourne; Brooke E. Crowley; Erik J. de Boer; Laurie R. Godfrey; Steven M. Goodman; Christine Griffiths; Owen Griffiths; Julian P. Hume; Walter G. Joyce; William L. Jungers; Stephanie Marciniak; Gregory J. Middleton; Kathleen M. Muldoon; Aliette Noromalala; Ventura R. Perez; George H. Perry; Roger Randalana and Henry T. Wright
2020
Quaternary Research
93
1
187-203
Abstract

Economic genome assembly from low coverage illuminated and nanopore data

Gatter, Thomas; Sarah von Lohnenden; Polina Drozdova; Thomas Hartmann and Peter F. Stadler
2020
bioRxiv
Abstract

Geometric quantum thermodynamics

Anza, Fabio; James P. Crutchfield
2020
arXiv
Abstract

Beyond density matrices: Geometric quantum states

Anza, Fabio and James P. Crutchfield
2020
arXiv
Abstract

Optimization in first-passage resetting

De Bruyne, B.; J. Randon-Furling and S. Redner
2020
Physical Review Letters
125
5
Abstract

Geometric quantum state estimation

Anza, Fabio and James P. Crutchfield
2020
arXiv
Abstract

Countering hate on social media: Large scale classification of hate and counter speech

Garland, Joshua; Keyan Ghazi-Zahedi; Jean-Gabriel Young; Laurent Hebert-Dufresne and Mirta Galesic
2020
arXiv
Abstract

Molecular evolution of tomato black ring virus and de novo generation of a new type of defective RNAs during long‐term passaging in different hosts

Budzynska, Daria; Julia Minicka; Beata Haslow-Jaroszewska and Santiago F. Elena
2020
Plant Pathology
Abstract

Evolution of antibiotic cross-resistance and collateral sensitivity in Staphylococcus epidermis using the mutant prevention concentration and the mutant selection window

Loranzo-Huntelman, Natalie Ann; Nina Singh; Alondra Valencia; Portia Mira; Maral Sakayan; Ian Boucher; Sharon Tang; Kelley Brennan; Crystal Gianvecchio; Sorel Fitz-Gibbon and Pamela Yeh
2020
Evolutionary Applications
13
4
808-823
Abstract

On the co-evolution of surface oxygen levels and animals

Cole, Devon B.; Daniel B. Mills; Douglas H. Erwin; Erik A. Sperling; Susannah M. Porter; Christopher T. Reinhard and Noah J. Planavsky
2020
Geobiology
118
3
260-281
Abstract

Statistical analysis and stochastic interest rate modeling for valuing the future with implications in climate change mitigation

Perello, Josep; Miguel Montero; Jaume Masoliver; J. Doyne Farmer and John Geana
2020
Journal of Statistical Mechanics - Theory and Experiment
2020
4
Abstract

Conservation value of small reserves

Volenec, Zoe M. and Andrew P. Dobson
2020
Conservation Biology
34
66
Abstract

Thermal efficiency of quantum memory compression

Loomis, Samuel P. and James P. Crutchfield
2020
Physical Review Letters
125
2
Abstract