Publications


Below you can find a list of my publications. Just click on an icon to read the abstract or to download the paper. The icons mean the following:

abstract read abstract     postscript download PostScript (gzip'ed)     pdf download PDF     ms-word download MS-Word

Design of an Interleaver for Turbo Codes using Genetic Algorithms
    Shoba Paulson, Wim Hordijk, Princy Gift, Subarani, and Shanmugam
    International Journal of Artificial Intelligence and Machine Learning, vol. 6(2), pp. 1-5, 2006

    abstract  pdf
An Overview of Biologically Inspired Computing in Information Security
    Wim Hordijk
    In K. Anbumani (ed.), Proceedings of the National Conference on Information Security, Coimbatore, India, pp. 1-14, 2005

    abstract  pdf
An Introduction to Evolutionary Computation
    Wim Hordijk
    In K. Krithivasan and R. Rama (eds.), Proceedings of the Research Level Group Discussion on Natural Computation, IIT Madras, Chennai, India, 2005

    abstract  pdf
An Overview of Computation in Cellular Automata
    Wim Hordijk
    In K. Krithivasan and R. Rama (eds.), Proceedings of the Research Level Group Discussion on Natural Computation, IIT Madras, Chennai, India, 2005

    abstract  pdf
Improving the Efficiency of SPR Moves in Phylogenetic Tree Search Methods Based on Maximum Likelihood
    Wim Hordijk and Olivier Gascuel
    Bioinformatics, vol. 21(24), pp 4338-4347, 2005

    abstract  pdf
Correlation Analysis of Coupled Fitness Landscapes
    Wim Hordijk and Stuart A. Kauffman
    Complexity, vol. 10(6), pp 41-49, 2005

    abstract  postscript  pdf
Material Representations: From the Genetic Code to the Evolution of Cellular Automata
    Luis M. Rocha and Wim Hordijk
    Artificial Life 11(1-2), pp. 189--214, 2005

    abstract  pdf
Supertree Algorithms for Ancestral Divergence Dates and Nested Taxa
    Charles Semple, Philip Daniel, Wim Hordijk, Roderic D. M. Page, and Mike Steel
    Bioinformatics 20(15), pp. 2355--2360, 2004

    abstract  postscript  pdf
Detecting Autocatalytic, Self-sustaining Sets in Chemical Reaction Systems
    Wim Hordijk and Mike Steel
    Journal of Theoretical Biology, Volume 227, Issue 4, pp 451-461, 2004

    abstract  postscript  pdf
The Footprint Sorting Problem
    Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, and Peter F. Stadler
    Journal of Chemical Information and Computer Sciences 44, pp 332-338, 2004

    abstract
   Due to an unfortunate copyright policy by the publisher, it is not possible to provide an electronic copy here...
Graph Laplacians, Nodal Domains, and Hyperplane Arrangements
    Türker Biyikoglu, Wim Hordijk, Josef Leydold, Tomaz Pisanski, and Peter F. Stadler
    Linear Algebra and its Applications 390, pp. 155--174, 2004

    abstract  postscript  pdf
Catalytic Reaction Sets, Decay, and the Preservation of Information
    Wim Hordijk and José F. Fontanari
    Proceedings of the IEEE International Conference on Integration of Knowledge Intensive Multi-Agent Systems, pp. 133--138, 2003

    abstract  pdf
Phase Transition and Landscape Statistics of the Number Partitioning Problem
    Peter F. Stadler, Wim Hordijk, and José F. Fontanari
    Physical Review E 67, 056701, 2003

    abstract  postscript  pdf
Shapes of Tree Representations of Spin-glass Landscapes
    Wim Hordijk, Peter F. Stadler, and José F. Fontanari
    Journal of Physics A 36, pp. 3671--3681, 2003

    abstract  postscript  pdf
Fast Fourier Transform for Fitness Landscapes
    Dan Rockmore, Peter Kostelec, Wim Hordijk, and Peter F. Stadler
    Applied and Computational Harmonic Analysis, Volume 12, Number 1, 2002

    abstract  postscript  pdf
Particles that Compute
    Wim Hordijk
    SFI Bulletin, Volume 16, Number 1, 2001

    pdf (Note: this will download the entire issue of the bulletin (1.7Mb). The article is on page 17.)
Upper Bound on the Products of Particle Interactions in Cellular Automata
    Wim Hordijk, Cosma R. Shalizi, and James P. Crutchfield
    Physica D 154, pp. 240--258, 2001

    abstract  postscript  pdf
Dynamics, Emergent Computation, and Evolution in Cellular Automata
    Wim Hordijk
    Ph.D. dissertation, University of New Mexico, 1999

    abstract  postscript  pdf
Mechanisms of Emergent Computation in Cellular Automata
    Wim Hordijk, James P. Crutchfield, and Melanie Mitchell
    Parallel Problem Solving from Nature, A.E. Eiben, Th. Back, M. Schoenauer, and H-P. Schwefel (eds.), Springer-Verlag, pp. 613-622, 1998

    abstract  postscript  pdf
Amplitude Spectra of Fitness Landscapes
    Wim Hordijk and Peter F. Stadler
    Advances in Complex Systems, Volume 1, Number 1, pp. 39-66, 1998

    abstract  postscript  pdf
Correlation Analysis of the Synchronizing-CA Landscape
    Wim Hordijk
    Physica D 107, pp. 225-264, 1997

    abstract  postscript  pdf
The Structure of the Synchronizing-CA Landscape
    Wim Hordijk
    Proceedings of the Workshop on Control Mechanisms for Complex Systems, M. Coombs and M. Sulcoski (eds.), pp. 93-107, 1996

    abstract  postscript  pdf
Embedded-Particle Computation in Evolved Cellular Automata
    Wim Hordijk, James P. Crutchfield, and Melanie Mitchell
    PhysComp96, T. Toffoli, M. Biafore, and J. Leao (eds.), New England Complex Systems Institute, pp. 153-158, 1996

    abstract  postscript  pdf
A Measure of Landscapes
    Wim Hordijk
    Evolutionary Computation, Volume 4, Number 4, pp. 335-360, 1996

    abstract  postscript  pdf
Optimization through Evolution
    Wim Hordijk
    Medium Econometrische Toepassingen, Volume 4, Number 2, 1996

    (Sorry, only available as hardcopy...)

The Usefulness of Recombination
    Wim Hordijk and Bernard Manderick
    Advances in Artifical Life: Proceedings of the Third European Conference on Artificial Life, F. Moran, A. Moreno, J.J. Merelo, and P. Chacon (eds.), Springer-Verlag, pp. 908-919, 1995

    abstract  postscript  pdf
Population Flow on Fitness Landscapes
    Wim Hordijk
    Unpublished thesis, 1994

    abstract  postscript