Santa Fe Institute

2003 Working Papers

Title: Modularity “for Free” in Genome Architecture
Author(s): Ricard Solé, Pau Fernandez
Files: [abstract] [pdf]
Paper #: 03-12-071
Date: Dec. 1, 2003
Title: External and Internal Complexity of Complex Adaptive Systems
Author(s): Jürgen Jost
Files: [abstract] [pdf]
Paper #: 03-12-070
Date: Dec. 1, 2003
Title: The Physics of Time and Dimension in the Economics of Financial Control In memory of Per Bak
Author(s): Martin Shubik, D. Smith
Files: [abstract] [pdf]
Paper #: 03-12-069
Date: Dec. 1, 2003
Title: Effective Complexity
Author(s): Murray Gell-Mann, Seth Lloyd
Files: [abstract] [pdf]
Paper #: 03-12-068
Date: Dec. 1, 2003
Title: Dynamic Response of Permian Brachiopod Communities to Long-Term Environmental Change
Author(s): Thomas Olszewski, Douglas Erwin
Files: [abstract] [pdf]
Paper #: 03-12-067
Date: Dec. 1, 2003
Title: The Long Memory of the Efficient Market
Author(s): Fabrizio Lillo, J. Farmer
Files: [abstract] [pdf]
Paper #: 03-12-066
Date: Dec. 1, 2003
Title: Power-Law Species-Area Relationships and Self-Similar Species Distributions Within Finite Areas
Author(s): Arnost Sizling, David Storch
Files: [abstract] [pdf]
Paper #: 03-11-065
Date: Nov. 1, 2003
Title: Multi-information in the Thermodynamic Limit
Author(s): Ionas Erb, Nihat Ay
Files: [abstract] [pdf]
Paper #: 03-11-064
Date: Nov. 1, 2003
Title: A Statistical Framework for Combining and Interpreting Proteomic Datasets
Author(s): Michael Gilchrist, Laura Salter, Andreas Wagner
Files: [abstract] [pdf]
Paper #: 03-11-063
Date: Nov. 1, 2003
Title: The Connectivity of Large Genetic Networks: Design, History, or Mere Chemistry?
Author(s): Andreas Wagner
Files: [abstract] [pdf]
Paper #: 03-11-062
Date: Nov. 1, 2003
Title: Information Theory of Complex Networks: On Evolution and Architectural Constraints
Author(s): Ricard Solé, Sergi Valverde
Files: [abstract] [pdf]
Paper #: 03-11-061
Date: Nov. 1, 2003
Title: FFTs on the Rotation Group
Author(s): Peter Kostelec, Daniel Rockmore
Files: [abstract] [pdf]
Paper #: 03-11-060
Date: Nov. 1, 2003
Title: The Organization of Responsiveness: Innovation and Recovery in the Trading Rooms of Lower Manhattan
Author(s): Daniel Beunza, David Stark
Files: [abstract] [pdf]
Paper #: 03-10-059
Date: Oct. 1, 2003
Title: Dynamic Decision Behavior and Optimal Guidance through Information Services: Models and Experiments
Author(s): Dirk Helbing
Files: [abstract] [pdf]
Paper #: 03-10-058
Date: Oct. 1, 2003
Title: Modeling and Optimization of Production Processes: Lessons from Traffic Dynamics
Author(s): Dirk Helbing
Files: [abstract] [pdf]
Paper #: 03-10-057
Date: Oct. 1, 2003
Title: Modeling Robust Settlements to Civil War: Indivisible Stakes and Distributional Compromises
Author(s): Elisabeth Wood
Files: [abstract] [pdf]
Paper #: 03-10-056
Date: Oct. 1, 2003
Title: The Role of Computation in Complex Regulatory Networks
Author(s): Pau Fernandez, Ricard Solé
Files: [abstract] [pdf]
Paper #: 03-10-055
Date: Oct. 1, 2003
Title: The Network Topology of the Interbank Market
Author(s): Michael Boss, Helmut Elsinger, Martin Summer, Stefan Thurner
Files: [abstract] [pdf]
Paper #: 03-10-054
Date: Oct. 1, 2003
Title: On the Linearity of Replicator Equations
Author(s): Nihat Ay, Ionas Erb
Files: [abstract] [pdf]
Paper #: 03-10-053
Date: Oct. 1, 2003
Title: On the Origin of Power Law Tails in Price Fluctuations
Author(s): J. Farmer, Fabrizio Lillo
Files: [abstract] [pdf]
Paper #: 03-09-052
Date: Sept. 1, 2003
Title: The Predictive Power of Zero Intelligence in Financial Markets
Author(s): J. Farmer, Paolo Patelli, Ilija Zovko
Files: [abstract] [pdf]
Paper #: 03-09-051
Date: Sept. 1, 2003
Title: Ontological Uncertainty and Innovation
Author(s): David Lane, Robert Maxfield
Files: [abstract] [pdf]
Paper #: 03-09-050
Date: Sept. 1, 2003
Title: Threshold Behavior and Aggregate Fluctuation
Author(s): Makoto Nirei
Files: [abstract] [pdf]
Paper #: 03-09-049
Date: Sept. 1, 2003
Title: Local Evaluation Functions and Global Evaluation Functions for Computational Evolution
Author(s): Jing Han
Files: [abstract] [pdf]
Paper #: 03-09-048
Date: Sept. 1, 2003
Title: Cooperation and Competition in Heterogeneous Environments: The Evolution of Resource Sharing in Clonal Plants
Author(s): Krisztian Magori, Beáta Oborny, Ulf Dieckmann, Geza Meszena
Files: [abstract] [pdf]
Paper #: 03-08-047
Date: Aug. 1, 2003
Title: Play Signaling and the Perception of Social Rules by Juvenile Chimpanzees
Author(s): Jessica Flack, Lisa Jeannotte, Frans de Waal
Files: [abstract] [pdf]
Paper #: 03-08-046
Date: Aug. 1, 2003
Title: From Finite to Infinite Range Order via Annealing: The Causal Architecture of Deformation Faulting in Annealed Close-Packed Crystals
Author(s): Dowman Varn, James Crutchfield
Files: [abstract] [pdf]
Paper #: 03-07-045
Date: July 1, 2003
Title: Hierarchical Small Worlds in Software Architecture
Author(s): Sergi Valverde, Ricard Solé
Files: [abstract] [pdf]
Paper #: 03-07-044
Date: July 1, 2003
Title: Adaptive Walks in a Gene Network Model of Morphogenesis: Insights into the Cambrian Explosion
Author(s): Ricard Solé, Pau Fernandez, Stuart Kauffman
Files: [abstract] [pdf]
Paper #: 03-07-043
Date: July 1, 2003
Title: Universality in Syntactic Dependency Networks
Author(s): Ramón Ferrer, Ricard Solé, Reinhard Köhler
Files: [abstract] [pdf]
Paper #: 03-06-042
Date: June 1, 2003
Title: Molecular Phylogeny of Coronaviruses Including Human SARS-CoV
Author(s): Lei Gao, Ji Qi, Haibin Wei, Yigang Sun, Bailin Hao
Files: [abstract] [pdf]
Paper #: 03-06-041
Date: June 1, 2003
Title: Dominance Style, Social Power, and Conflict Management in Macaque Societies: A Conceptual Framework
Author(s): Jessica Flack, Frans de Waal
Files: [abstract] [pdf]
Paper #: 03-06-040
Date: June 1, 2003
Title: Risk Management in Biological Evolution
Author(s): Andreas Wagner
Files: [abstract] [pdf]
Paper #: 03-06-039
Date: June 1, 2003
Title: Lessons from a Genetic Network about the Causes of Dominance
Author(s): Andreas Wagner
Files: [abstract] [pdf]
Paper #: 03-06-038
Date: June 1, 2003
Title: Asymmetric Sequence Divergence of Duplicate Genes
Author(s): G. Conant, Andreas Wagner
Files: [abstract] [pdf]
Paper #: 03-06-037
Date: June 1, 2003
Title: Strategic Freedom, Constraint, and Symmetry in One-Period Markets with Cash and Credit Payment
Author(s): D. Smith, Martin Shubik
Files: [abstract] [pdf]
Paper #: 03-05-036
Date: May 1, 2003
Title: Structure, Clearinghouses and Symmetry
Author(s): Martin Shubik, D. Smith
Files: [abstract] [pdf]
Paper #: 03-05-035
Date: May 1, 2003
Title: External and Internal Control in Plant Development
Author(s): Beáta Oborny
Files: [abstract] [pdf]
Paper #: 03-05-034
Date: May 1, 2003
Title: Survival and Competition of Clonal Plant Populations in Spatially and Temporally Heterogeneous Habitats
Author(s): Adám Kun, Beáta Oborny
Files: [abstract] [pdf]
Paper #: 03-05-033
Date: May 1, 2003
Title: Self-Organization from Structural Refrigeration
Author(s): D. Smith
Files: [abstract] [pdf]
Paper #: 03-05-032
Date: May 1, 2003
Title: The Evolution of Cooperation in Heterogeneous Populations
Author(s): Samuel Bowles, Herbert Gintis
Files: [abstract] [pdf]
Paper #: 03-05-031
Date: May 1, 2003
Title: Cooperation in Balinese Rice Farming
Author(s): J. Lansing, John Miller
Files: [abstract] [pdf]
Paper #: 03-05-030
Date: May 1, 2003
Title: Growing Adaptive Organizations: An Agent-Based Computational Approach
Author(s): Joshua Epstein
Files: [abstract] [pdf]
Paper #: 03-05-029
Date: May 1, 2003
Title: Phase Transitions in Unstable Cancer Cell Populations
Author(s): Ricard Solé
Files: [abstract] [pdf]
Paper #: 03-04-028
Date: April 1, 2003
Title: The Thermodynamic Approach to the Market Equilibrium
Author(s): Victor Sergeev
Files: [abstract] [pdf]
Paper #: 03-04-027
Date: April 1, 2003
Title: Does Market Theory Apply to Biology?
Author(s): Samuel Bowles, Peter Hammerstein
Files: [abstract] [pdf]
Paper #: 03-04-026
Date: April 1, 2003
Title: Aggregation of Variables and System Decomposition
Author(s): Max Shpak, Peter Stadler, Günter Wagner, Joachim Hermisson
Files: [abstract] [pdf]
Paper #: 03-04-025
Date: April 1, 2003
Title: Network Structure and Robustness of Marine Food Webs
Author(s): Jennifer Dunne, Richard Williams, Neo Martinez
Files: [abstract] [pdf]
Paper #: 03-04-024
Date: April 1, 2003
Title: HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics
Author(s): Peter Hraber, Bette Korber, Steven Wolinsky, Henry Erlich, Elizabeth Trachtenberg
Files: [abstract] [pdf]
Paper #: 03-04-023
Date: April 1, 2003
Title: Inferring Pattern and Disorder in Close-Packed Structures from X-ray Diffraction Studies, Part II: Structure and Intrinsic Computation in Zinc Sulphide
Author(s): Dowman Varn, G. Canright, James Crutchfield
Files: [abstract] [pdf]
Paper #: 03-03-022
Date: March 1, 2003
Title: Inferring Pattern and Disorder in Close-Packed Structures from X-ray Diffraction Studies, Part I: Epsilon-Machine Spectral Reconstruction Theory
Author(s): Dowman Varn, G. Canright, James Crutchfield
Files: [abstract] [pdf]
Paper #: 03-03-021
Date: March 1, 2003
Title: Groups, Social Influences and Inequality: A Memberships Theory Perspective on Poverty Traps
Author(s): Steven Durlauf
Files: [abstract] [pdf]
Paper #: 03-03-020
Date: March 1, 2003
Title: Communication and Coordination
Author(s): John Miller, Scott Moser
Files: [abstract] [pdf]
Paper #: 03-03-019
Date: March 1, 2003
Title: On the Notion of Fitness, or: The Selfish Ancestor
Author(s): Jürgen Jost
Files: [abstract] [pdf]
Paper #: 03-03-018
Date: March 1, 2003
Title: The Topology of the Possible
Author(s): Walter Fontana
Files: [abstract] [pdf]
Paper #: 03-03-017
Date: March 1, 2003
Title: Perspective: Evolution and Detection of Genetic Robustness
Author(s): J. de Visser, Joachim Hermisson, Günter Wagner, Lauren Meyers, Homayoun Bagheri-Chaichian
Files: [abstract] [pdf]
Paper #: 03-03-016
Date: March 1, 2003
Title: Towards a Unity of the Human Behavioral Sciences
Author(s): Herbert Gintis
Files: [abstract] [pdf]
Paper #: 03-02-015
Date: Feb. 1, 2003
Title: Complexity and Empirical Economics
Author(s): Steven Durlauf
Files: [abstract] [pdf]
Paper #: 03-02-014
Date: Feb. 1, 2003
Title: Multinomial Choice with Social Interactions
Author(s): William Brock, Steven Durlauf
Files: [abstract] [pdf]
Paper #: 03-02-013
Date: Feb. 1, 2003
Title: Epigenetic vs. Genetic, a Story of the Evolution of the Germline
Author(s): Michael Lachmann, Guy Sella
Files: [abstract] [pdf]
Paper #: 03-02-012
Date: Feb. 1, 2003
Title: Surveying Phylogenetic Footprints in Large Gene Clusters: Applications to Hox Cluster Duplications
Author(s): Sonja Prohaska, Claudia Fried, Christoph Flamm, Günter Wagner, Peter Stadler
Files: [abstract] [pdf]
Paper #: 03-02-011
Date: Feb. 1, 2003
Title: Economic Production as Chemistry
Author(s): John Padgett
Files: [abstract] [pdf]
Paper #: 03-02-010
Date: Feb. 1, 2003
Title: Principles and Parameters of Molecular Robustness
Author(s): David Krakauer, Joshua Plotkin
Files: [abstract] [pdf]
Paper #: 03-02-009
Date: Feb. 1, 2003
Title: Robustness in Biological Systems - A Provisional Taxonomy
Author(s): David Krakauer
Files: [abstract] [pdf]
Paper #: 03-02-008
Date: Feb. 1, 2003
Title: Learning Nash Equilibrium
Author(s): Dean Foster, H. Young
Files: [abstract] [pdf]
Paper #: 03-02-007
Date: Feb. 1, 2003
Title: Phase Transition and Landscape Statistics of the Number Partitioning Problem
Author(s): Peter Stadler, Wim Hordijk, José Fontanari
Files: [abstract] [pdf]
Paper #: 03-02-006
Date: Feb. 1, 2003
Title: Allometric Scaling of Ant Foraging Trail Networks
Author(s): Joseph Jun, John Pepper, Van Savage, James Gillooly, James Brown
Files: [abstract] [pdf]
Paper #: 03-02-005
Date: Feb. 1, 2003
Title: Network Dynamics and Field Evolution: The Growth of Interorganizational Collaboration in the Life Sciences
Author(s): Walter Powell, Douglas White, Kenneth Koput, Jason Owen-Smith
Files: [abstract] [pdf]
Paper #: 03-02-004
Date: Feb. 1, 2003
Title: “If It Isn’t Broken, Don’t Fix It”: Extremal Search on a Technology Landscape
Author(s): José Lobo, Deborah Strumsky
Files: [abstract] [pdf]
Paper #: 03-02-003
Date: Feb. 1, 2003
Title: An Error Catastrophe in Cancer?
Author(s): Ricard Solé, Thomas Deisboeck
Files: [abstract] [pdf]
Paper #: 03-02-002
Date: Feb. 1, 2003
Title: Spin Glasses: Still Complex After All These Years?
Author(s): Daniel Stein
Files: [abstract] [pdf]
Paper #: 03-01-001
Date: Jan. 1, 2003

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