Santa Fe Institute

1995 Working Papers

Title: Foresight, Complexity, and Strategy
Author(s): David Lane, Robert Maxfield
Files: [abstract] [pdf]
Paper #: 95-12-106
Date: Dec. 1, 1995
Title: Parallel cone Bipolar to On-β Ganglion Cell Pathways in the Cat Retina: Spatial Responses, Spatial Aliasing, and Spatial Variance
Author(s): Bennett Levitan, Gershon Bushsbaum
Files: [abstract] [pdf]
Paper #: 95-12-105
Date: Dec. 1, 1995
Title: Complexity and Homoplasy
Author(s): Daniel McShea
Files: [abstract] [pdf]
Paper #: 95-12-104
Date: Dec. 1, 1995
Title: Dynamics of Diversification in State Space
Author(s): Daniel McShea
Files: [abstract] [pdf]
Paper #: 95-12-103
Date: Dec. 1, 1995
Title: Market Organization
Author(s): Gérard Weisbuch, Alan Kirman, Dorothea Herreiner
Files: [abstract] [pdf]
Paper #: 95-11-102
Date: Nov. 1, 1995
Title: Routines and Other Recurring Action Patterns of Organizations: Contemporary Research Issues
Author(s): Michael Cohen, Roger Burkhart, Giovanni Dosi, Massimo Egidi, Luigi Marendo
Files: [abstract] [pdf]
Paper #: 95-11-101
Date: Nov. 1, 1995
Title: Exploring Phenotype Space Through Neutral Evolution
Author(s): Martijn Huynen
Files: [abstract] [pdf]
Paper #: 95-10-100
Date: Oct. 1, 1995
Title: Analysis of RNA Sequence Structure Maps by Exhaustive Enumeration
Author(s): Walter Grüner, Robert Giegerich, Dirk Storthmann, Christian Reidys, Jacqueline Weber
Files: [abstract] [pdf]
Paper #: 95-10-099
Date: Oct. 1, 1995
Title: Bio-Molecular Shapes and Algebraic Structures
Author(s): Christian Reidys, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-10-098
Date: Oct. 1, 1995
Title: Eye-Brain Maps
Author(s): Jack Cowan, A. Friedman
Files: [abstract] [pdf]
Paper #: 95-10-097
Date: Oct. 1, 1995
Title: Fault and Failure Tolerance
Author(s): Jack Cowan
Files: [abstract] [pdf]
Paper #: 95-10-096
Date: Oct. 1, 1995
Title: Computational Mechanics of Cellular Automata: An Example
Author(s): James Hanson, James Crutchfield
Files: [abstract] [pdf]
Paper #: 95-10-095
Date: Oct. 1, 1995
Title: Evolutionary Dynamics and Optimization
Author(s): Christian Forst, Christian Reidys, Jacqueline Weber
Files: [abstract] [pdf]
Paper #: 95-10-094
Date: Oct. 1, 1995
Title: Chaotic Interactions of Self-Replicating RNA
Author(s): Christian Forst
Files: [abstract] [pdf]
Paper #: 95-10-093
Date: Oct. 1, 1995
Title: Determining Whether Two Data Sets are From the Same Distribution
Author(s): David Wolpert
Files: [abstract] [pdf]
Paper #: 95-10-092
Date: Oct. 1, 1995
Title: The Bootstrap is Inconsistent with Probability Theory
Author(s): David Wolpert
Files: [abstract] [pdf]
Paper #: 95-10-091
Date: Oct. 1, 1995
Title: Hamming-Chromatography
Author(s): Andreas Schweinhorst, Andreas Schober, Rolf Günther, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-10-090
Date: Oct. 1, 1995
Title: RNA Folding on Parallel Computers
Author(s): Ivo Hofacker, Martijn Huynen, Peter Stadler, Paul Storlorz
Files: [abstract] [pdf]
Paper #: 95-10-089
Date: Oct. 1, 1995
Title: The Introduced Hawaiian Avifauna Reconsidered: Evidence for Self-Organized Criticality?
Author(s): Timothy Keitt, Pablo Marquet
Files: [abstract] [pdf]
Paper #: 95-10-088
Date: Oct. 1, 1995
Title: Managing Fragmented Landscapes: A Macroscopic Approach
Author(s): Timothy Keitt, Deal Urban, Bruce Milne
Files: [abstract] [pdf]
Paper #: 95-10-087
Date: Oct. 1, 1995
Title: On the Speed of Quantum Computers with Finite Size Clocks
Author(s): Tino Gramss
Files: [abstract] [pdf]
Paper #: 95-10-086
Date: Oct. 1, 1995
Title: Genetic Function Analysis
Author(s): Bruce Sawhill
Files: [abstract] [pdf]
Paper #: 95-10-085
Date: Oct. 1, 1995
Title: Discrete Choice with Social Interactions I: Theory
Author(s): William Brock, Steven Durlauf
Files: [abstract] [pdf]
Paper #: 95-10-084
Date: Oct. 1, 1995
Title: Approximate Scaling Properties of RNA Free Energy Landscapes
Author(s): Subbiah Baskaran, Peter Stadler, Peter Schuster
Files: [abstract] [pdf]
Paper #: 95-10-083
Date: Oct. 1, 1995
Title: Solving the Schrödinger Equation for the Feynman Quantum Computer
Author(s): Tino Gramss
Files: [abstract] [pdf]
Paper #: 95-09-082
Date: Sept. 1, 1995
Title: Non-Abelian Cellular Automata
Author(s): Cristopher Moore
Files: [abstract] [pdf]
Paper #: 95-09-081
Date: Sept. 1, 1995
Title: Algebraic Properties of the Block Transformation on Cellular Automata
Author(s): Cristopher Moore
Files: [abstract] [pdf]
Paper #: 95-09-080
Date: Sept. 1, 1995
Title: Recursion Theory on the Reals and Continuous-Time Computation
Author(s): Cristopher Moore
Files: [abstract] [pdf]
Paper #: 95-09-079
Date: Sept. 1, 1995
Title: Quasi-Linear Cellular Automata
Author(s): Cristopher Moore
Files: [abstract] [pdf]
Paper #: 95-09-078
Date: Sept. 1, 1995
Title: Nonlinear Time Series, Complexity Theory, and Finance
Author(s): William Brock, pedro de Lima
Files: [abstract] [pdf]
Paper #: 95-09-077
Date: Sept. 1, 1995
Title: Local Minima of p-Spin Models
Author(s): Peter Stadler, Bärbel Krakhofer
Files: [abstract] [pdf]
Paper #: 95-09-076
Date: Sept. 1, 1995
Title: Model Misspecification Tests, Model Building and Predictability in Complex Systems
Author(s): Radu Manuca, Robert Savit
Files: [abstract] [pdf]
Paper #: 95-09-075
Date: Sept. 1, 1995
Title: On Bias Plus Variance
Author(s): David Wolpert
Files: [abstract] [pdf]
Paper #: 95-08-074
Date: Aug. 1, 1995
Title: Pattern Formation and Functionality in Swarm Models
Author(s): Erik Rauch, Mark Millonas, Dante Chialvo
Files: [abstract] [pdf]
Paper #: 95-08-073
Date: Aug. 1, 1995
Title: How Useful is the “Standard Model” of the Electronic Theory of Metals?
Author(s): Philip Anderson
Files: [abstract] [pdf]
Paper #: 95-07-072
Date: July 1, 1995
Title: New Physics of Metals: Fermi Surfaces Without Fermi Liquids
Author(s): Philip Anderson
Files: [abstract] [pdf]
Paper #: 95-07-071
Date: July 1, 1995
Title: Segregation Distortion and Heteroclinic Cycles
Author(s): Bärbel Stadler
Files: [abstract] [pdf]
Paper #: 95-07-070
Date: July 1, 1995
Title: Random Field Models for Fitness Landscapes
Author(s): Peter Stadler, Robert Happel
Files: [abstract] [pdf]
Paper #: 95-07-069
Date: July 1, 1995
Title: Canonical Approximation of Fitness Landscapes
Author(s): Robert Happel, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-07-068
Date: July 1, 1995
Title: Landscapes and Their Correlation Functions
Author(s): Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-07-067
Date: July 1, 1995
Title: Social Complex Adaptive Systems: Some Hawaiian Examples
Author(s): Robert Hommon
Files: [abstract] [pdf]
Paper #: 95-07-066
Date: July 1, 1995
Title: Aligning Simulation Models: A Case Study and Results
Author(s): Robert Axtell, Robert Axelrod, Joshua Epstein, Michael Cohen
Files: [abstract] [pdf]
Paper #: 95-07-065
Date: July 1, 1995
Title: Temporally Asymmetric Fluctuations are Sufficient for the Biological Energy Transduction
Author(s): Dante Chialvo, Mark Millonas
Files: [abstract] [pdf]
Paper #: 95-07-064
Date: July 1, 1995
Title: Autocatalytic Networks with Translation
Author(s): Robert Happel, Robert Hecht, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-07-063
Date: July 1, 1995
Title: Autocatalytic Replication in a CSTR and Constant Organization
Author(s): Robert Happel, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-07-062
Date: July 1, 1995
Title: Neighborhood Feedbacks, Endogenous Stratification, and Income Inequality
Author(s): Steven Durlauf
Files: [abstract] [pdf]
Paper #: 95-07-061
Date: July 1, 1995
Title: Estimating Predictability: Redundancy and Surrogate Data Method
Author(s): Milan Palus, L. Pecen, D. Pivka
Files: [abstract] [pdf]
Paper #: 95-07-060
Date: July 1, 1995
Title: Detecting Nonlinearity in Multivariate Time Series
Author(s): Milan Palus
Files: [abstract] [pdf]
Paper #: 95-07-059
Date: July 1, 1995
Title: Generic Properties of Combinatory Maps: Neutral Networks of RNA Secondary Structures
Author(s): Christian Reidys, Peter Stadler, Peter Schuster
Files: [abstract] [pdf]
Paper #: 95-07-058
Date: July 1, 1995
Title: Base Pairing Probabilities in a Complete HIV-1 RNA
Author(s): Martijn Huynen, Alan Perelson, Wayne Vieira, Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-07-057
Date: July 1, 1995
Title: Immunology for Physicists
Author(s): Alan Perelson, Gérard Weisbuch
Files: [abstract] [pdf]
Paper #: 95-06-056
Date: June 1, 1995
Title: Binding of Multivalent Ligands to Cells: Effects of Cell and Receptor Density
Author(s): Bernhard Sulzer, Alan Perelson
Files: [abstract] [pdf]
Paper #: 95-06-055
Date: June 1, 1995
Title: Criticality and Parallelism in Combinatorial Optimization
Author(s): William Macready, Athanassios Siapas, Stuart Kauffman
Files: [abstract] [pdf]
Paper #: 95-06-054
Date: June 1, 1995
Title: Evolving Information Processing Organizations
Author(s): John Miller
Files: [abstract] [pdf]
Paper #: 95-06-053
Date: June 1, 1995
Title: Breeding Competitive Strategies
Author(s): David Midgley, Robert Marks, Lee Cooper
Files: [abstract] [pdf]
Paper #: 95-06-052
Date: June 1, 1995
Title: Clustered Volatility in Multiagent Dynamics
Author(s): Michael Youssefmir, Bernardo Huberman
Files: [abstract] [pdf]
Paper #: 95-05-051
Date: May 1, 1995
Title: Control of Voltage-Dependent Biomolecules Via Nonequilibrium Kinetic Focusing
Author(s): Mark Millonas, Dante Chialvo
Files: [abstract] [pdf]
Paper #: 95-05-050
Date: May 1, 1995
Title: A Measure of Landscapes
Author(s): Wim Hordijk
Files: [abstract] [pdf]
Paper #: 95-05-049
Date: May 1, 1995
Title: Evolutionary Algorithms, Fitness Landscapes and Search
Author(s): Terry Jones
Files: [abstract] [pdf]
Paper #: 95-05-048
Date: May 1, 1995
Title: Broken Ergodicity and the Geometry of Rugged Landscapes
Author(s): Daniel Stein, C. Newman
Files: [abstract] [pdf]
Paper #: 95-05-047
Date: May 1, 1995
Title: What Makes an Optimization Problem Hard?
Author(s): William Macready, David Wolpert
Files: [abstract] [pdf]
Paper #: 95-05-046
Date: May 1, 1995
Title: A Comparison of Political Institutions in a Tiebout Model
Author(s): Ken Kollman, John Miller, Scott Page
Files: [abstract] [pdf]
Paper #: 95-04-045
Date: April 1, 1995
Title: When Optimization Isn't Optimal: Aggregation and Information Contagion
Author(s): David Lane, Roberta Vescovini
Files: [abstract] [pdf]
Paper #: 95-04-044
Date: April 1, 1995
Title: Hierarchical Crossover and Probability Landscapes of Genetic Operators
Author(s): Stefan Bornholdt, Heinz Schuster
Files: [abstract] [pdf]
Paper #: 95-04-043
Date: March 31, 1995
Title: Search Strategies for Applied Molecular Evolution
Author(s): Stuart Kauffman, William Macready
Files: [abstract] [pdf]
Paper #: 95-04-042
Date: April 1, 1995
Title: Connectivity and Financial Network Shutdown
Author(s): Laurence Eisenberg
Files: [abstract] [pdf]
Paper #: 95-04-041
Date: April 1, 1995
Title: Elements of a Theory of Simulation
Author(s): Steen Rasmussen, Christopher Barrett
Files: [abstract] [pdf]
Paper #: 95-04-040
Date: March 31, 1995
Title: Adaptive Walks with Noisy Fitness Measurements
Author(s): Bennett Levitan, Stuart Kauffman
Files: [abstract] [pdf]
Paper #: 95-04-039
Date: April 1, 1995
Title: No Provable Limits to ‘Scientific Knowledge’
Author(s): E. Jackson
Files: [abstract] [pdf]
Paper #: 95-04-038
Date: March 31, 1995
Title: A Strategic Market Game with Secured Lending
Author(s): Ioannis Karatzas, Martin Shubik, William Sudderth
Files: [abstract] [pdf]
Paper #: 95-03-037
Date: Feb. 28, 1995
Title: Chaos in Core Oscillations of Globular Clusters
Author(s): Joseph Breeden, Haldan Cohn
Files: [abstract] [pdf]
Paper #: 95-03-036
Date: Feb. 28, 1995
Title: The Emergence of Memory: Categorisation Far from Equilibrium
Author(s): Andrew Wuensche
Files: [abstract] [pdf]
Paper #: 95-03-035
Date: March 1, 1995
Title: Faster Valuation of Financial Derivatives
Author(s): Spassimin Paskov, Joseph Traub
Files: [abstract] [pdf]
Paper #: 95-03-034
Date: March 1, 1995
Title: How Swarms Build Cognitive Maps
Author(s): Dante Chialvo, Mark Millonas
Files: [abstract] [pdf]
Paper #: 95-03-033
Date: Feb. 28, 1995
Title: Nonequilibrium Fluctuation-Induced Phenomena in Josephson Junctions
Author(s): Mark Millonas, Dante Chialvo
Files: [abstract] [pdf]
Paper #: 95-03-032
Date: Feb. 28, 1995
Title: Population Structure, Fitness Surfaces, and Linkage in the Shifting Balance Process
Author(s): Aviv Bergman, David Goldstein, Kent Holsinger, Marcus Feldman
Files: [abstract] [pdf]
Paper #: 95-03-031
Date: March 1, 1995
Title: Towards a Theory of Landscapes
Author(s): Peter Stadler
Files: [abstract] [pdf]
Paper #: 95-03-030
Date: Feb. 28, 1995
Title: Rational Routes to Randomness
Author(s): William Brock, Cars Hommes
Files: [abstract] [pdf]
Paper #: 95-03-029
Date: March 1, 1995
Title: The Convergence and Stability of Cultures: Local Convergence and Global Polarization
Author(s): Robert Axelrod
Files: [abstract] [pdf]
Paper #: 95-03-028
Date: March 1, 1995
Title: Optimizing Stochastic and Multiple Fitness Functions
Author(s): Joseph Breeden
Files: [abstract] [pdf]
Paper #: 95-02-027
Date: Jan. 31, 1995
Title: What Bayes Has to Say About the Evidence Procedure
Author(s): David Wolpert, Charles Strauss
Files: [abstract] [pdf]
Paper #: 95-02-026
Date: Jan. 31, 1995
Title: One Operator, One Landscape
Author(s): Terry Jones
Files: [abstract] [pdf]
Paper #: 95-02-025
Date: Jan. 31, 1995
Title: Crossover, Macromutation, and Population-Based Search
Author(s): Terry Jones
Files: [abstract] [pdf]
Paper #: 95-02-024
Date: Jan. 31, 1995
Title: Off-Training-Set Error for the Gibbs and the Bayes Optimal Generalizers
Author(s): Tal Grossman, Emanuel Knill, David Wolpert
Files: [abstract] [pdf]
Paper #: 95-02-023
Date: Feb. 1, 1995
Title: Fitness Distance Correlation as a Measure of Problem Difficulty for Genetic Algorithms
Author(s): Terry Jones, Stephanie Forrest
Files: [abstract] [pdf]
Paper #: 95-02-022
Date: Jan. 31, 1995
Title: Genetic Algorithms and Heuristic Search
Author(s): Terry Jones, Stephanie Forrest
Files: [abstract] [pdf]
Paper #: 95-02-021
Date: Jan. 31, 1995
Title: Use of Adaptive Networks to Define Highly Predictable Protein Secondary-Structure Classes
Author(s): Alan Lapedes, Evan Steeg, Robert Farber
Files: [abstract] [pdf]
Paper #: 95-02-020
Date: Feb. 1, 1995
Title: Use of Bad Training Data for Better Predictions
Author(s): Tal Grossman, Alan Lapedes
Files: [abstract] [pdf]
Paper #: 95-02-019
Date: Feb. 1, 1995
Title: Noise Sensitivity Signatures for Model Selection
Author(s): Tal Grossman, Alan Lapedes
Files: [abstract] [pdf]
Paper #: 95-02-018
Date: Feb. 1, 1995
Title: Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites
Author(s): John Heumann, Alan Lapedes, Gary Stormo
Files: [abstract] [pdf]
Paper #: 95-02-017
Date: Feb. 1, 1995
Title: Covariation of Mutations in the V3 Loop of HIV-1: An Information Theoretic Analysis
Author(s): B. Korber, R. Farber, D. Wolpert, Alan Lapedes
Files: [abstract] [pdf]
Paper #: 95-02-016
Date: Feb. 1, 1995
Title: A Complex Systems Approach to Computational Molecular Biology
Author(s): Alan Lapedes
Files: [abstract] [pdf]
Paper #: 95-02-015
Date: Feb. 1, 1995
Title: Predicting Protein Secondary Structure Using Neural Net and Statistical Methods
Author(s): Paul Stolorz, Alan Lapedes, Yuan Xia
Files: [abstract] [pdf]
Paper #: 95-02-014
Date: Feb. 1, 1995
Title: Determination of Eukaryotic Protein Coding Regions Using Neural Networks and Information Theory
Author(s): Robert Farber, Alan Lapedes, Karl Sirotkin
Files: [abstract] [pdf]
Paper #: 95-02-013
Date: Feb. 1, 1995
Title: A Parallel Non-Neural Trigger Tracker for the SSC
Author(s): R. Farber, W. Kinnison, Alan Lapedes
Files: [abstract] [pdf]
Paper #: 95-02-012
Date: Feb. 1, 1995
Title: Application of Neural Networks and Other Machine Learning Algorithms to DNA Sequence Analysis
Author(s): Alan Lapedes, C. Barnes, C. Burks, R. Farber, K. Sirotkin
Files: [abstract] [pdf]
Paper #: 95-02-011
Date: Feb. 1, 1995
Title: No Free Lunch Theorems for Search
Author(s): David Wolpert, William Macready
Files: [abstract] [pdf]
Paper #: 95-02-010
Date: Feb. 1, 1995
Title: Self-Organized Criticality and ComplexityTheory
Author(s): Bruce Sawhill
Files: [abstract] [pdf]
Paper #: 95-02-009
Date: Feb. 1, 1995
Title: Technological Evolution and Adaptive Organizations
Author(s): Stuart Kauffman, William Macready
Files: [abstract] [pdf]
Paper #: 95-02-008
Date: Feb. 1, 1995
Title: Hybridized Crossover-Based Search Techniques for Program Discovery
Author(s): Una-May O’Reilly, Franz Oppacher
Files: [abstract] [pdf]
Paper #: 95-02-007
Date: Jan. 31, 1995
Title: Evolutionary Dynamics of RNA and the Neutral Theory
Author(s): Martijn Huynen, Peter Stadler, Walter Fontana
Files: [abstract] [pdf]
Paper #: 95-01-006
Date: Jan. 1, 1995
Title: Evolving Globally Synchronized Cellular Automata
Author(s): Rajarshi Das, James Crutchfield, Melanie Mitchell, James Hanson
Files: [abstract] [pdf]
Paper #: 95-01-005
Date: Jan. 1, 1995
Title: Choice and Action
Author(s): David Lane, Franco Malerba, Robert Maxfield, Luigi Orsenigo
Files: [abstract] [pdf]
Paper #: 95-01-004
Date: Jan. 1, 1995
Title: Off-Training Set Error and A Priori Distinctions Between Learning Algorithms
Author(s): David Wolpert
Files: [abstract] [pdf]
Paper #: 95-01-003
Date: Jan. 1, 1995
Title: Rapid Turnover of Plasma Virions and CD4 Lymphocytes in HIV-1 Infection
Author(s): David Ho, Avidan Neumann, Alan Perelson, Wen Chen, John Leonard
Files: [abstract] [pdf]
Paper #: 95-01-002
Date: Jan. 1, 1995
Title: A First Look at the Second Metamorphosis of Science
Author(s): E. Jackson
Files: [abstract] [pdf]
Paper #: 95-01-001
Date: Jan. 1, 1995

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