Working Papers List
2003
© NOTICE: The working papers provided here are included by permission of the contributing authors as a means to ensure timely distribution of their scholarly and technical work on a non-commercial basis. Copyright and all rights therein are maintained by the authors. It is understood that all persons copying this information will adhere to the terms and constraints invoked by each author's copyright. These works may not be reposted without the explicit permission of the copyright holder.
Papers are only available electronically. Librarians may request printed copies by sending e-mail to wp@santafe.edu.
| Title: | Modularity “for Free” in Genome Architecture |
| Author(s): | Ricard V. Solé and Pau Fernandez |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-071 |
| Title: | External and Internal Complexity of Complex Adaptive Systems |
| Author(s): | Juergen Jost |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-070 |
| Title: | The Physics of Time and Dimension in the Economics of Financial Control In memory of Per Bak |
| Author(s): | Martin Shubik and D. Eric Smith |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-069 |
| Title: | Effective Complexity |
| Author(s): | Murray Gell-Mann and Seth Lloyd |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-068 |
| Title: | Dynamic Response of Permian Brachiopod Communities to Long-Term Environmental Change |
| Author(s): | Thomas D. Olszewski and Douglas H. Erwin |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-067 |
| Title: | The Long Memory of the Efficient Market |
| Author(s): | Fabrizio Lillo and J. Doyne Farmer |
| Files: | [abstract] [pdf] |
| Paper #: | 03-12-066 |
| Title: | Power-Law Species-Area Relationships and Self-Similar Species Distributions Within Finite Areas |
| Author(s): | Arnost Sizling and David Storch |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-065 |
| Title: | Multi-information in the Thermodynamic Limit |
| Author(s): | Ionas Erb and Nihat Ay |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-064 |
| Title: | A Statistical Framework for Combining and Interpreting Proteomic Datasets |
| Author(s): | Michael Gilchrist, Laura Salter, and Andreas Wagner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-063 |
| Title: | The Connectivity of Large Genetic Networks: Design, History, or Mere Chemistry? |
| Author(s): | Andreas Wagner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-062 |
| Title: | Information Theory of Complex Networks: On Evolution and Architectural Constraints |
| Author(s): | Ricard V. Solé and Sergi Valverde |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-061 |
| Title: | FFTs on the Rotation Group |
| Author(s): | Peter Kostelec and Daniel N. Rockmore |
| Files: | [abstract] [pdf] |
| Paper #: | 03-11-060 |
| Title: | The Organization of Responsiveness: Innovation and Recovery in the Trading Rooms of Lower Manhattan |
| Author(s): | Daniel Beunza and David Stark |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-059 |
| Title: | Dynamic Decision Behavior and Optimal Guidance through Information Services: Models and Experiments |
| Author(s): | Dirk Helbing |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-058 |
| Title: | Modeling and Optimization of Production Processes: Lessons from Traffic Dynamics |
| Author(s): | Dirk Helbing |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-057 |
| Title: | Modeling Robust Settlements to Civil War: Indivisible Stakes and Distributional Compromises |
| Author(s): | Elisabeth Jean Wood |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-056 |
| Title: | The Role of Computation in Complex Regulatory Networks |
| Author(s): | Pau Fernandez and Ricard V. Solé |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-055 |
| Title: | The Network Topology of the Interbank Market |
| Author(s): | Michael Boss, Helmut Elsinger, Martin Summer, and Stefan Thurner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-054 |
| Title: | On the Linearity of Replicator Equations |
| Author(s): | Nihat Ay and Ionas Erb |
| Files: | [abstract] [pdf] |
| Paper #: | 03-10-053 |
| Title: | On the Origin of Power Law Tails in Price Fluctuations |
| Author(s): | J. Doyne Farmer and Fabrizio Lillo |
| Files: | [abstract] [pdf] |
| Paper #: | 03-09-052 |
| Title: | The Predictive Power of Zero Intelligence in Financial Markets |
| Author(s): | J. Doyne Farmer, Paolo Patelli, and Ilija I. Zovko |
| Files: | [abstract] [pdf] |
| Paper #: | 03-09-051 |
| Title: | Threshold Behavior and Aggregate Fluctuation |
| Author(s): | Makoto Nirei |
| Files: | [abstract] [pdf] |
| Paper #: | 03-09-049 |
| Title: | Local Evaluation Functions and Global Evaluation Functions for Computational Evolution |
| Author(s): | Jing Han |
| Files: | [abstract] [pdf] |
| Paper #: | 03-09-048 |
| Title: | Cooperation and Competition in Heterogeneous Environments: The Evolution of Resource Sharing in Clonal Plants |
| Author(s): | Krisztian Magori, Beáta Oborny, Ulf Dieckmann, and Geza Meszena |
| Files: | [abstract] [pdf] |
| Paper #: | 03-08-047 |
| Title: | Play Signaling and the Perception of Social Rules by Juvenile Chimpanzees |
| Author(s): | Jessica C. Flack, Lisa A. Jeannotte, and Frans B. M. de Waal |
| Files: | [abstract] [pdf] |
| Paper #: | 03-08-046 |
| Title: | From Finite to Infinite Range Order via Annealing: The Causal Architecture of Deformation Faulting in Annealed Close-Packed Crystals |
| Author(s): | Dowman P. Varn and James P. Crutchfield |
| Files: | [abstract] [pdf] |
| Paper #: | 03-07-045 |
| Title: | Hierarchical Small Worlds in Software Architecture |
| Author(s): | Sergi Valverde and Ricard V. Solé |
| Files: | [abstract] [pdf] |
| Paper #: | 03-07-044 |
| Title: | Adaptive Walks in a Gene Network Model of Morphogenesis: Insights into the Cambrian Explosion |
| Author(s): | Ricard V. Solé, Pau Fernandez, and Stuart A. Kauffman |
| Files: | [abstract] [pdf] |
| Paper #: | 03-07-043 |
| Title: | Universality in Syntactic Dependency Networks |
| Author(s): | Ramón Ferrer, Ricard V. Solé, and Reinhard Köhler |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-042 |
| Title: | Molecular Phylogeny of Coronaviruses Including Human SARS-CoV |
| Author(s): | Lei Gao, Ji Qi, Haibin Wei, Yigang Sun, and Bailin Hao |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-041 |
| Title: | Dominance Style, Social Power, and Conflict Management in Macaque Societies: A Conceptual Framework |
| Author(s): | Jessica C. Flack and Frans B. M. de Waal |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-040 |
| Title: | Risk Management in Biological Evolution |
| Author(s): | Andreas Wagner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-039 |
| Title: | Lessons from a Genetic Network about the Causes of Dominance |
| Author(s): | Andreas Wagner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-038 |
| Title: | Asymmetric Sequence Divergence of Duplicate Genes |
| Author(s): | G. C. Conant and Andreas Wagner |
| Files: | [abstract] [pdf] |
| Paper #: | 03-06-037 |
| Title: | Strategic Freedom, Constraint, and Symmetry in One-Period Markets with Cash and Credit Payment |
| Author(s): | D. Eric Smith and Martin Shubik |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-036 |
| Title: | Structure, Clearinghouses and Symmetry |
| Author(s): | Martin Shubik and D. Eric Smith |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-035 |
| Title: | External and Internal Control in Plant Development |
| Author(s): | Beáta Oborny |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-034 |
| Title: | Survival and Competition of Clonal Plant Populations in Spatially and Temporally Heterogeneous Habitats |
| Author(s): | Adám Kun and Beáta Oborny |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-033 |
| Title: | Self-Organization from Structural Refrigeration |
| Author(s): | D. Eric Smith |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-032 |
| Title: | The Evolution of Cooperation in Heterogeneous Populations |
| Author(s): | Samuel Bowles and Herbert Gintis |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-031 |
| Title: | Cooperation in Balinese Rice Farming |
| Author(s): | J. Stephen Lansing and John H. Miller |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-030 |
| Title: | Growing Adaptive Organizations: An Agent-Based Computational Approach |
| Author(s): | Joshua M. Epstein |
| Files: | [abstract] [pdf] |
| Paper #: | 03-05-029 |
| Title: | Phase Transitions in Unstable Cancer Cell Populations |
| Author(s): | Ricard V. Solé |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-028 |
| Title: | The Thermodynamic Approach to the Market Equilibrium |
| Author(s): | Victor Sergeev |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-027 |
| Title: | Does Market Theory Apply to Biology? |
| Author(s): | Samuel Bowles and Peter Hammerstein |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-026 |
| Title: | Aggregation of Variables and System Decomposition |
| Author(s): | Max Shpak, Peter F. Stadler, Günter P. Wagner, and Joachim Hermisson |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-025 |
| Title: | Network Structure and Robustness of Marine Food Webs |
| Author(s): | Jennifer A. Dunne, Richard J. Williams, and Neo D. Martinez |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-024 |
| Title: | HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics |
| Author(s): | Peter T. Hraber, Bette T. Korber, Steven Wolinsky, Henry Erlich, Elizabeth Trachtenberg, , andhomas B. Kepler |
| Files: | [abstract] [pdf] |
| Paper #: | 03-04-023 |
| Title: | Inferring Pattern and Disorder in Close-Packed Structures from X-ray Diffraction Studies, Part II: Structure and Intrinsic Computation in Zinc Sulphide |
| Author(s): | Dowman P. Varn, G. S. Canright, and James P. Crutchfield |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-022 |
| Title: | Inferring Pattern and Disorder in Close-Packed Structures from X-ray Diffraction Studies, Part I: Epsilon-Machine Spectral Reconstruction Theory |
| Author(s): | Dowman P. Varn, G. S. Canright, and James P. Crutchfield |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-021 |
| Title: | Groups, Social Influences and Inequality: A Memberships Theory Perspective on Poverty Traps |
| Author(s): | Steven N. Durlauf |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-020 |
| Title: | Communication and Coordination |
| Author(s): | John H. Miller and Scott Moser |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-019 |
| Title: | On the Notion of Fitness, or: The Selfish Ancestor |
| Author(s): | Jürgen Jost |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-018 |
| Title: | The Topology of the Possible |
| Author(s): | Walter Fontana |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-017 |
| Title: | Perspective: Evolution and Detection of Genetic Robustness |
| Author(s): | J. Arjan G. M. de Visser, Joachim Hermisson, Günter P. Wagner, Lauren Ancel Meyers, Homayoun Bagheri-Chaichian, Jeffrey L. Blanchard, Lin Chao, James M. Cheverud, Santiago F. Elena, Walter Fontana, Greg Gibson, Thomas F. Hansen, David Krakauer, Richard C. Lewontin, Charles Ofria, Sean H. Rice, and et al. |
| Files: | [abstract] [pdf] |
| Paper #: | 03-03-016 |
| Title: | Towards a Unity of the Human Behavioral Sciences |
| Author(s): | Herbert Gintis |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-015 |
| Title: | Complexity and Empirical Economics |
| Author(s): | Steven N. Durlauf |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-014 |
| Title: | Multinomial Choice with Social Interactions |
| Author(s): | William A. Brock and Steven N. Durlauf |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-013 |
| Title: | Epigenetic vs. Genetic, a Story of the Evolution of the Germline |
| Author(s): | Michael Lachmann and Guy Sella |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-012 |
| Title: | Surveying Phylogenetic Footprints in Large Gene Clusters: Applications to Hox Cluster Duplications |
| Author(s): | Sonja Prohaska, Claudia Fried, Christoph Flamm, Günter Wagner, and Peter F. Stadler |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-011 |
| Title: | Economic Production as Chemistry |
| Author(s): | John Padgett |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-010 |
| Title: | Principles and Parameters of Molecular Robustness |
| Author(s): | David C. Krakauer and Joshua B. Plotkin |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-009 |
| Title: | Robustness in Biological Systems - A Provisional Taxonomy |
| Author(s): | David C. Krakauer |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-008 |
| Title: | Learning Nash Equilibrium |
| Author(s): | Dean P. Foster and H. Peyton Young |
| Files: | [abstract] [pdf] |
| Paper #: | 03-02-007 |
| Title: | Phase Transition and Landscape Statistics of the Number Partitioning Problem |
| Author(s): | Peter F. Stadler, Wim Hordijk, and José F. Fontanari |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-02-006 |
| Title: | Allometric Scaling of Ant Foraging Trail Networks |
| Author(s): | Joseph Jun, John W. Pepper, Van M. Savage, James F. Gillooly, and James H. Brown |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-02-005 |
| Title: | Network Dynamics and Field Evolution: The Growth of Interorganizational Collaboration in the Life Sciences |
| Author(s): | Walter W. Powell, Douglas R. White, Kenneth W. Koput, and Jason Owen-Smith |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-02-004 |
| Title: | “If It Isn’t Broken, Don’t Fix It”: Extremal Search on a Technology Landscape |
| Author(s): | José Lobo and Deborah Strumsky |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-02-003 |
| Title: | An Error Catastrophe in Cancer? |
| Author(s): | Ricard V. Solé and Thomas S. Deisboeck |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-02-002 |
| Title: | Spin Glasses: Still Complex After All These Years? |
| Author(s): | Daniel L. Stein |
| Files: | [abstract] [gzipped postscript] [postscript] [pdf] |
| Paper #: | 03-01-001 |