Using Lazy Evaluation to Simulate Realistic- Size Repertoires in Models of the Immune System

D. J. Smith, Stephanie Forrest, D. H. Ackley, and Alan S. Perelson

97-09-078

We describe a method of implementing efficient computer simulations of immune systems that have a large number of unique B-cell and/or T-cell clones. The method uses an implementation technique called lazy evaluation to create the illusion that all clones are being simulated, while only actually simulating a much smaller number of clones that can respond to the antigens in the simulation. The method is effective because only 0.001% to 0.01% of clones can typically be simulated by an antigen, and because many simulations involve only a small number of distinct antigens. A lazy simulation of a realistic number of clones and 10 distinct antigens is 1,000 times faster and 10,000 times smaller than a conventional simulation--making simulations of immune systems with realistic-size repertoires computationally tractable.