CSSS 2007 Beijing-Readings-Week-Three

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CSSS 2007 Beijing Home Faculty Participants Schedule Readings and Lecture Notes Week One Week Two Week Three Week Four Projects T-Shirt Chinese Visa Information Travel Details and Logistics Final Papers Forum

Contents 1 Jia Qing-Shan (Samuel) 1.1 Lecture Notes 1.2 Additional Reading 2 Han Jing 2.1 Lecture Notes 2.2 Additional Reading 3 Jim Glazier 3.1 Lecture Notes 3.2 Additional Reading 4 Raissa D'Souza 4.1 Lecture Notes 4.2 Additional Reading 5 David Feldman 5.1 Lecture Notes

Jia Qing-Shan (Samuel)

Lecture Notes

• Ordinal Optimization: Soft Optimization for Hard Problems. Introduction Main Presentation

Additional Reading

• Some references (in Chinese)
• Ho, Y.-C., Zhao, Q.-C., and Jia, Q.-S., Ordinal Optimization: Soft Optimization for Hard

Problems, Springer, 2007.

Han Jing

Lecture Notes

• The Collective Behavior of Multi-Agent Systems 1
• The Collective Behavior of Multi-Agent Systems 2-1, The Collective Behavior of Multi-Agent Systems 2-2

Additional Reading

Jim Glazier

Lecture Notes

• CompuCell 3D Quickstart Guide
• CompuCell3D Manual
• CompuCell Player
• Installing CompuCell on Linux systems
• CompuCell3D Running Modes
• CompuCell3D Introduction - tutorials

Additional Reading

• Balter, et al., The Glazier-Graner-Hogeweg Model: Extension, future directions, and opportunities for further study. in Single-Cell-Based Models in Biology and Medicine, Anderson, et al. (eds), Mathematics and Biosciences in Interation 151-167. 2007.
• Glazier, et al., Magnetization to Morphogenesis: A brief history of the Blazier-Graner-Hogeweg model. in Single-Cell-Based Models in Biology and Medicine, Anderson, et al. (eds), Mathematics and Biosciences in Interation 79-106. 2007.

Raissa D'Souza

Lecture Notes

• Understanding networks: Topology, Activity, Phase transitions

Additional Reading

David Feldman

Lecture Notes

• Advice on Giving Research Presentations